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Donald Bryant

TitleErnest C. Pollard Professor of Biotechnology
InstitutionEberly College of Science
DepartmentBiochemistry and Molecular Biology
Address235 Frear South Lab
University Park, PA 16802
Phone8148651992
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    Other Positions
    InstitutionHuck Institutes of the Life Sciences


    Collapse Overview 
    Collapse overview
    PREFERRED TITLE/ROLE:

    Ernest C. Pollard Professor in Biotechnology
    Professor of Biochemistry and Molecular Biology

    EDUCATION:

    B.Sc., Massachusetts Institute of Technology, 1972
    Ph.D., University of California, Los Angeles, 1977

    NARRATIVE:

    Dr. Bryant's research focuses on the physiology, biochemistry, genetics, and genomics of photosynthetic bacteria, specifically the genomics, structural and functional relationships, metabolism, physiology and ecology of chlorophototrophic bacteria.


    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Junqueira ACM, Ratan A, Acerbi E, Drautz-Moses DI, Premkrishnan BNV, Costea PI, Linz B, Purbojati RW, Paulo DF, Gaultier NE, Subramanian P, Hasan NA, Colwell RR, Bork P, Azeredo-Espin AML, Bryant DA, Schuster SC. The microbiomes of blowflies and houseflies as bacterial transmission reservoirs. Sci Rep. 2017 Nov 24; 7(1):16324. PMID: 29176730.
      View in: PubMed
    2. Pérez AA, Ferlez BH, Applegate AM, Walters K, He Z, Shen G, Golbeck JH, Bryant DA. Presence of a [3Fe-4S] cluster in a PsaC variant as a functional component of the photosystem I electron transfer chain in Synechococcus sp. PCC 7002. Photosynth Res. 2017 Sep 15. PMID: 28916964.
      View in: PubMed
    3. Therien JB, Artz JH, Poudel S, Hamilton TL, Liu Z, Noone SM, Adams MWW, King PW, Bryant DA, Boyd ES, Peters JW. The Physiological Functions and Structural Determinants of Catalytic Bias in the [FeFe]-Hydrogenases CpI and CpII of Clostridium pasteurianum Strain W5. Front Microbiol. 2017; 8:1305. PMID: 28747909.
      View in: PubMed
    4. Thiel V, Tank M, Tomsho LP, Burhans R, Gay SE, Hamilton TL, Schuster SC, Bryant DA. Draft Genome Sequence of Anoxybacillusayderensis Strain MT-Cab (Firmicutes). Genome Announc. 2017 Jun 29; 5(26). PMID: 28663291.
      View in: PubMed
    5. Orf GS, Collins AM, Niedzwiedzki DM, Tank M, Thiel V, Kell A, Bryant DA, Montaño GA, Blankenship RE. Polymer-Chlorosome Nanocomposites Consisting of Non-Native Combinations of Self-Assembling Bacteriochlorophylls. Langmuir. 2017 Jun 27; 33(25):6427-6438. PMID: 28585832.
      View in: PubMed
    6. Tank M, Liu Z, Frigaard NU, Tomsho LP, Schuster SC, Bryant DA. Complete Genome Sequence of the Photoautotrophic and Bacteriochlorophyll e-Synthesizing Green Sulfur Bacterium Chlorobaculum limnaeum DSM 1677T. Genome Announc. 2017 Jun 15; 5(24). PMID: 28619803.
      View in: PubMed
    7. Thiel V, Drautz-Moses DI, Purbojati RW, Schuster SC, Lindemann S, Bryant DA. Genome Sequence of Prosthecochloris sp. Strain HL-130-GSB from the Phylum Chlorobi. Genome Announc. 2017 Jun 15; 5(24). PMID: 28619807.
      View in: PubMed
    8. Thiel V, Hügler M, Ward DM, Bryant DA. The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. II. Metabolic Functions of Abundant Community Members Predicted from Metagenomic Analyses. Front Microbiol. 2017; 8:943. PMID: 28634470.
      View in: PubMed
    9. Günther LM, Jendrny M, Bloemsma EA, Tank M, Oostergetel GT, Bryant DA, Knoester J, Köhler J. Correction to "Structure of Light-Harvesting Aggregates in Individual Chlorosomes". J Phys Chem B. 2017 06 15; 121(23):5882. PMID: 28580782.
      View in: PubMed
    10. Ho MY, Soulier NT, Canniffe DP, Shen G, Bryant DA. Light regulation of pigment and photosystem biosynthesis in cyanobacteria. Curr Opin Plant Biol. 2017 Jun; 37:24-33. PMID: 28391049.
      View in: PubMed
    11. Bernstein HC, McClure RS, Thiel V, Sadler NC, Kim YM, Chrisler WB, Hill EA, Bryant DA, Romine MF, Jansson JK, Fredrickson JK, Beliaev AS. Indirect Interspecies Regulation: Transcriptional and Physiological Responses of a Cyanobacterium to Heterotrophic Partnership. mSystems. 2017 Mar-Apr; 2(2). PMID: 28289730.
      View in: PubMed
    12. Mancini JA, Kodali G, Jiang J, Reddy KR, Lindsey JS, Bryant DA, Dutton PL, Moser CC. Multi-step excitation energy transfer engineered in genetic fusions of natural and synthetic light-harvesting proteins. J R Soc Interface. 2017 Feb; 14(127). PMID: 28179548.
      View in: PubMed
    13. Pérez AA, Gajewski JP, Ferlez BH, Ludwig M, Baker CS, Golbeck JH, Bryant DA. Zn2+-Inducible Expression Platform for Synechococcus sp. Strain PCC 7002 Based on the smtA Promoter/Operator and smtB Repressor. Appl Environ Microbiol. 2017 Feb 01; 83(3). PMID: 27836841.
      View in: PubMed
    14. Thweatt JL, Ferlez BH, Golbeck JH, Bryant DA. BciD Is a Radical S-Adenosyl-l-methionine (SAM) Enzyme That Completes Bacteriochlorophyllide e Biosynthesis by Oxidizing a Methyl Group into a Formyl Group at C-7. J Biol Chem. 2017 01 27; 292(4):1361-1373. PMID: 27994052.
      View in: PubMed
    15. Zhang S, Qian X, Chang S, Dismukes GC, Bryant DA. Natural and Synthetic Variants of the Tricarboxylic Acid Cycle in Cyanobacteria: Introduction of the GABA Shunt into Synechococcus sp. PCC 7002. Front Microbiol. 2016; 7:1972. PMID: 28018308.
      View in: PubMed
    16. Fushimi K, Rockwell NC, Enomoto G. Cyanobacteriochrome Photoreceptors Lacking the Canonical Cys Residue. Biochemistry. 2016 Dec 20; 55(50):6981-6995. PMID: 27935696.
      View in: PubMed
    17. Nabhan S, Bunk B, Spröer C, Liu Z, Bryant DA, Overmann J. Genome Sequence of Prosthecochloris sp. Strain CIB 2401 of the Phylum Chlorobi. Genome Announc. 2016 Nov 03; 4(6). PMID: 27811102.
      View in: PubMed
    18. Xiong W, Shen G, Bryant DA. Synechocystis sp. PCC 6803 CruA (sll0147) encodes lycopene cyclase and requires bound chlorophyll a for activity. Photosynth Res. 2017 Mar; 131(3):267-280. PMID: 27743323.
      View in: PubMed
    19. Ho MY, Gan F, Shen G, Zhao C, Bryant DA. Far-red light photoacclimation (FaRLiP) in Synechococcus sp. PCC 7335: I. Regulation of FaRLiP gene expression. Photosynth Res. 2017 Feb; 131(2):173-186. PMID: 27638320.
      View in: PubMed
    20. Ho MY, Gan F, Shen G, Bryant DA. Far-red light photoacclimation (FaRLiP) in Synechococcus sp. PCC 7335. II.Characterization of phycobiliproteins produced during acclimation to far-red light. Photosynth Res. 2017 Feb; 131(2):187-202. PMID: 27623780.
      View in: PubMed
    21. Pérez AA, Rodionov DA, Bryant DA. Identification and Regulation of Genes for Cobalamin Transport in the Cyanobacterium Synechococcus sp. Strain PCC 7002. J Bacteriol. 2016 10 01; 198(19):2753-61. PMID: 27457716.
      View in: PubMed
    22. Pérez AA, Liu Z, Rodionov DA, Li Z, Bryant DA. Complementation of Cobalamin Auxotrophy in Synechococcus sp. Strain PCC 7002 and Validation of a Putative Cobalamin Riboswitch In Vivo. J Bacteriol. 2016 Oct 01; 198(19):2743-52. PMID: 27457714; PMCID: PMC5019059 [Available on 04/01/17].
    23. McClure RS, Overall CC, McDermott JE, Hill EA, Markillie LM, McCue LA, Taylor RC, Ludwig M, Bryant DA, Beliaev AS. Network analysis of transcriptomics expands regulatory landscapes in Synechococcus sp. PCC 7002. Nucleic Acids Res. 2016 Oct 14; 44(18):8810-8825. PMID: 27568004.
      View in: PubMed
    24. Bernstein HC, McClure RS, Hill EA, Markillie LM, Chrisler WB, Romine MF, McDermott JE, Posewitz MC, Bryant DA, Konopka AE, Fredrickson JK, Beliaev AS. Unlocking the Constraints of Cyanobacterial Productivity: Acclimations Enabling Ultrafast Growth. MBio. 2016 07 26; 7(4). PMID: 27460798; PMCID: PMC4981716.
    25. Llorens-Marès T, Liu Z, Allen LZ, Rusch DB, Craig MT, Dupont CL, Bryant DA, Casamayor EO. Speciation and ecological success in dimly lit waters: horizontal gene transfer in a green sulfur bacteria bloom unveiled by metagenomic assembly. ISME J. 2017 01; 11(1):201-211. PMID: 27392085.
      View in: PubMed
    26. Ho MY, Shen G, Canniffe DP, Zhao C, Bryant DA. Light-dependent chlorophyll f synthase is a highly divergent paralog of PsbA of photosystem II. Science. 2016 08 26; 353(6302). PMID: 27386923.
      View in: PubMed
    27. Thiel V, Wood JM, Olsen MT, Tank M, Klatt CG, Ward DM, Bryant DA. The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. I. Microbial Diversity Based on 16S rRNA Gene Amplicons and Metagenomic Sequencing. Front Microbiol. 2016; 7:919. PMID: 27379049; PMCID: PMC4911352.
    28. Günther LM, Jendrny M, Bloemsma EA, Tank M, Oostergetel GT, Bryant DA, Knoester J, Köhler J. Structure of Light-Harvesting Aggregates in Individual Chlorosomes. J Phys Chem B. 2016 Jun 23; 120(24):5367-76. PMID: 27240572.
      View in: PubMed
    29. Shen G, Gan F, Bryant DA. The siderophilic cyanobacterium Leptolyngbya sp. strain JSC-1 acclimates to iron starvation by expressing multiple isiA-family genes. Photosynth Res. 2016 Jun; 128(3):325-40. PMID: 27071628.
      View in: PubMed
    30. Tsukatani Y, Mizoguchi T, Thweatt J, Tank M, Bryant DA, Tamiaki H. Glycolipid analyses of light-harvesting chlorosomes from envelope protein mutants of Chlorobaculum tepidum. Photosynth Res. 2016 Jun; 128(3):235-41. PMID: 26869354.
      View in: PubMed
    31. Klotz MG, Bryant DA, Fredrickson JK, Inskeep WP, Kühl M. Editorial: Systems Biology and Ecology of Microbial Mat Communities. Front Microbiol. 2016; 7:115. PMID: 26903994; PMCID: PMC4746284.
    32. Krishnan A, Zhang S, Liu Y, Tadmori KA, Bryant DA, Dismukes CG. Consequences of ccmR deletion on respiration, fermentation and H2 metabolism in cyanobacterium Synechococcus sp. PCC 7002. Biotechnol Bioeng. 2016 07; 113(7):1448-59. PMID: 26704377.
      View in: PubMed
    33. Melendrez MC, Becraft ED, Wood JM, Olsen MT, Bryant DA, Heidelberg JF, Rusch DB, Cohan FM, Ward DM. Recombination Does Not Hinder Formation or Detection of Ecological Species of Synechococcus Inhabiting a Hot Spring Cyanobacterial Mat. Front Microbiol. 2015; 6:1540. PMID: 26834710; PMCID: PMC4712262.
    34. Hamilton TL, Bryant DA, Macalady JL. The role of biology in planetary evolution: cyanobacterial primary production in low-oxygen Proterozoic oceans. Environ Microbiol. 2016 Feb; 18(2):325-40. PMID: 26549614; PMCID: PMC5019231.
    35. Zhao C, Gan F, Shen G, Bryant DA. RfpA, RfpB, and RfpC are the Master Control Elements of Far-Red Light Photoacclimation (FaRLiP). Front Microbiol. 2015; 6:1303. PMID: 26635768; PMCID: PMC4658448.
    36. Qian X, Kumaraswamy GK, Zhang S, Gates C, Ananyev GM, Bryant DA, Dismukes GC. Inactivation of nitrate reductase alters metabolic branching of carbohydrate fermentation in the cyanobacterium Synechococcus sp. strain PCC 7002. Biotechnol Bioeng. 2016 May; 113(5):979-88. PMID: 26479976.
      View in: PubMed
    37. Ludwig M, Chua TT, Chew CY, Bryant DA. Fur-type transcriptional repressors and metal homeostasis in the cyanobacterium Synechococcus sp. PCC 7002. Front Microbiol. 2015; 6:1217. PMID: 26582412; PMCID: PMC4628125.
    38. Zhang S, Liu Y, Bryant DA. Metabolic engineering of Synechococcus sp. PCC 7002 to produce poly-3-hydroxybutyrate and poly-3-hydroxybutyrate-co-4-hydroxybutyrate. Metab Eng. 2015 Nov; 32:174-83. PMID: 26474789.
      View in: PubMed
    39. Gan F, Bryant DA. Adaptive and acclimative responses of cyanobacteria to far-red light. Environ Microbiol. 2015 Oct; 17(10):3450-65. PMID: 26234306.
      View in: PubMed
    40. Gorka M, Perez A, Baker CS, Ferlez B, van der Est A, Bryant DA, Golbeck JH. Electron transfer from the A1A and A1B sites to a tethered Pt nanoparticle requires the FeS clusters for suppression of the recombination channel. J Photochem Photobiol B. 2015 Nov; 152(Pt B):325-34. PMID: 26541876.
      View in: PubMed
    41. Jackson SA, Eaton-Rye JJ, Bryant DA, Posewitz MC, Davies FK. Dynamics of Photosynthesis in a Glycogen-Deficient glgC Mutant of Synechococcus sp. Strain PCC 7002. Appl Environ Microbiol. 2015 Sep; 81(18):6210-22. PMID: 26150450; PMCID: PMC4542258.
    42. Nowack S, Olsen MT, Schaible GA, Becraft ED, Shen G, Klapper I, Bryant DA, Ward DM. The molecular dimension of microbial species: 2. Synechococcus strains representative of putative ecotypes inhabiting different depths in the Mushroom Spring microbial mat exhibit different adaptive and acclimative responses to light. Front Microbiol. 2015; 6:626. PMID: 26175719; PMCID: PMC4484337.
    43. Olsen MT, Nowack S, Wood JM, Becraft ED, LaButti K, Lipzen A, Martin J, Schackwitz WS, Rusch DB, Cohan FM, Bryant DA, Ward DM. The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat. Front Microbiol. 2015; 6:604. PMID: 26157428; PMCID: PMC4477158.
    44. Becraft ED, Wood JM, Rusch DB, Kühl M, Jensen SI, Bryant DA, Roberts DW, Cohan FM, Ward DM. The molecular dimension of microbial species: 1. Ecological distinctions among, and homogeneity within, putative ecotypes of Synechococcus inhabiting the cyanobacterial mat of Mushroom Spring, Yellowstone National Park. Front Microbiol. 2015; 6:590. PMID: 26157420; PMCID: PMC4475828.
    45. Zhao C, Li Z, Li T, Zhang Y, Bryant DA, Zhao J. High-yield production of extracellular type-I cellulose by the cyanobacterium Synechococcus sp. PCC 7002. Cell Discov. 2015; 1:15004. PMID: 27462405; PMCID: PMC4851311.
    46. Kim YM, Nowack S, Olsen MT, Becraft ED, Wood JM, Thiel V, Klapper I, Kühl M, Fredrickson JK, Bryant DA, Ward DM, Metz TO. Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms. Front Microbiol. 2015; 6:209. PMID: 25941514; PMCID: PMC4400912.
    47. Zhang S, Bryant DA. Biochemical Validation of the Glyoxylate Cycle in the Cyanobacterium Chlorogloeopsis fritschii Strain PCC 9212. J Biol Chem. 2015 May 29; 290(22):14019-30. PMID: 25869135; PMCID: PMC4447974.
    48. Tank M, Bryant DA. Nutrient requirements and growth physiology of the photoheterotrophic Acidobacterium, Chloracidobacterium thermophilum. Front Microbiol. 2015; 6:226. PMID: 25870589; PMCID: PMC4376005.
    49. Thiel V, Tomsho LP, Burhans R, Gay SE, Schuster SC, Ward DM, Bryant DA. Draft Genome Sequence of the Deinococcus-Thermus Bacterium Meiothermus ruber Strain A. Genome Announc. 2015 Mar 26; 3(2). PMID: 25814606; PMCID: PMC4384146.
    50. Tank M, Bryant DA. Chloracidobacterium thermophilum gen. nov., sp. nov.: an anoxygenic microaerophilic chlorophotoheterotrophic acidobacterium. Int J Syst Evol Microbiol. 2015 May; 65(Pt 5):1426-30. PMID: 25667398.
      View in: PubMed
    51. Rockwell NC, Martin SS, Gan F, Bryant DA, Lagarias JC. NpR3784 is the prototype for a distinctive group of red/green cyanobacteriochromes using alternative Phe residues for photoproduct tuning. Photochem Photobiol Sci. 2015 Feb; 14(2):258-69. PMID: 25342233.
      View in: PubMed
    52. Gan F, Shen G, Bryant DA. Occurrence of Far-Red Light Photoacclimation (FaRLiP) in Diverse Cyanobacteria. Life (Basel). 2014 Dec 29; 5(1):4-24. PMID: 25551681; PMCID: PMC4390838.
    53. Yang MK, Yang YH, Chen Z, Zhang J, Lin Y, Wang Y, Xiong Q, Li T, Ge F, Bryant DA, Zhao JD. Proteogenomic analysis and global discovery of posttranslational modifications in prokaryotes. Proc Natl Acad Sci U S A. 2014 Dec 30; 111(52):E5633-42. PMID: 25512518; PMCID: PMC4284577.
    54. Therien JB, Zadvornyy OA, Posewitz MC, Bryant DA, Peters JW. Growth of Chlamydomonas reinhardtii in acetate-free medium when co-cultured with alginate-encapsulated, acetate-producing strains of Synechococcus sp. PCC 7002. Biotechnol Biofuels. 2014; 7(1):154. PMID: 25364380; PMCID: PMC4216383.
    55. Bernstein HC, Konopka A, Melnicki MR, Hill EA, Kucek LA, Zhang S, Shen G, Bryant DA, Beliaev AS. Effect of mono- and dichromatic light quality on growth rates and photosynthetic performance of Synechococcus sp. PCC 7002. Front Microbiol. 2014; 5:488. PMID: 25285095; PMCID: PMC4168726.
    56. Thiel V, Hamilton TL, Tomsho LP, Burhans R, Gay SE, Schuster SC, Ward DM, Bryant DA. Draft Genome Sequence of a Sulfide-Oxidizing, Autotrophic Filamentous Anoxygenic Phototrophic Bacterium, Chloroflexus sp. Strain MS-G (Chloroflexi). Genome Announc. 2014 Sep 04; 2(5). PMID: 25189583; PMCID: PMC4155588.
    57. Thiel V, Hamilton TL, Tomsho LP, Burhans R, Gay SE, Ramaley RF, Schuster SC, Steinke L, Bryant DA. Draft Genome Sequence of the Moderately Thermophilic Bacterium Schleiferia thermophila Strain Yellowstone (Bacteroidetes). Genome Announc. 2014 Aug 28; 2(4). PMID: 25169864; PMCID: PMC4148732.
    58. Gan F, Zhang S, Rockwell NC, Martin SS, Lagarias JC, Bryant DA. Extensive remodeling of a cyanobacterial photosynthetic apparatus in far-red light. Science. 2014 Sep 12; 345(6202):1312-7. PMID: 25214622.
      View in: PubMed
    59. Hamilton TL, Bovee RJ, Thiel V, Sattin SR, Mohr W, Schaperdoth I, Vogl K, Gilhooly WP, Lyons TW, Tomsho LP, Schuster SC, Overmann J, Bryant DA, Pearson A, Macalady JL. Coupled reductive and oxidative sulfur cycling in the phototrophic plate of a meromictic lake. Geobiology. 2014 Sep; 12(5):451-68. PMID: 24976102.
      View in: PubMed
    60. Hartzler DA, Niedzwiedzki DM, Bryant DA, Blankenship RE, Pushkar Y, Savikhin S. Triplet excited state energies and phosphorescence spectra of (bacterio)chlorophylls. J Phys Chem B. 2014 Jul 03; 118(26):7221-32. PMID: 24896677.
      View in: PubMed
    61. Sinninghe Damsté JS, Rijpstra WI, Hopmans EC, Foesel BU, Wüst PK, Overmann J, Tank M, Bryant DA, Dunfield PF, Houghton K, Stott MB. Ether- and ester-bound iso-diabolic acid and other lipids in members of acidobacteria subdivision 4. Appl Environ Microbiol. 2014 Sep; 80(17):5207-18. PMID: 24928878; PMCID: PMC4136120.
    62. Ludwig M, Pandelia ME, Chew CY, Zhang B, Golbeck JH, Krebs C, Bryant DA. ChlR protein of Synechococcus sp. PCC 7002 is a transcription activator that uses an oxygen-sensitive [4Fe-4S] cluster to control genes involved in pigment biosynthesis. J Biol Chem. 2014 Jun 13; 289(24):16624-39. PMID: 24782315; PMCID: PMC4059106.
    63. Beliaev AS, Romine MF, Serres M, Bernstein HC, Linggi BE, Markillie LM, Isern NG, Chrisler WB, Kucek LA, Hill EA, Pinchuk GE, Bryant DA, Wiley HS, Fredrickson JK, Konopka A. Inference of interactions in cyanobacterial-heterotrophic co-cultures via transcriptome sequencing. ISME J. 2014 Nov; 8(11):2243-55. PMID: 24781900; PMCID: PMC4992078.
    64. Zhang S, Shen G, Li Z, Golbeck JH, Bryant DA. Vipp1 is essential for the biogenesis of Photosystem I but not thylakoid membranes in Synechococcus sp. PCC 7002. J Biol Chem. 2014 Jun 06; 289(23):15904-14. PMID: 24764304; PMCID: PMC4047364.
    65. Stolyar S, Liu Z, Thiel V, Tomsho LP, Pinel N, Nelson WC, Lindemann SR, Romine MF, Haruta S, Schuster SC, Bryant DA, Fredrickson JK. Genome Sequence of the Thermophilic Cyanobacterium Thermosynechococcus sp. Strain NK55a. Genome Announc. 2014 Jan 30; 2(1). PMID: 24482507; PMCID: PMC3907722.
    66. Niedzwiedzki DM, Orf GS, Tank M, Vogl K, Bryant DA, Blankenship RE. Photophysical properties of the excited states of bacteriochlorophyll f in solvents and in chlorosomes. J Phys Chem B. 2014 Mar 06; 118(9):2295-305. PMID: 24410285.
      View in: PubMed
    67. Rodionova IA, Li X, Thiel V, Stolyar S, Stanton K, Fredrickson JK, Bryant DA, Osterman AL, Best AA, Rodionov DA. Comparative genomics and functional analysis of rhamnose catabolic pathways and regulons in bacteria. Front Microbiol. 2013; 4:407. PMID: 24391637; PMCID: PMC3870299.
    68. Liu Z, Müller J, Li T, Alvey RM, Vogl K, Frigaard NU, Rockwell NC, Boyd ES, Tomsho LP, Schuster SC, Henke P, Rohde M, Overmann J, Bryant DA. Genomic analysis reveals key aspects of prokaryotic symbiosis in the phototrophic consortium "Chlorochromatium aggregatum". Genome Biol. 2013 Nov 22; 14(11):R127. PMID: 24267588; PMCID: PMC4053972.
    69. Kronfel CM, Kuzin AP, Forouhar F, Biswas A, Su M, Lew S, Seetharaman J, Xiao R, Everett JK, Ma LC, Acton TB, Montelione GT, Hunt JF, Paul CE, Dragomani TM, Boutaghou MN, Cole RB, Riml C, Alvey RM, Bryant DA, Schluchter WM. Structural and biochemical characterization of the bilin lyase CpcS from Thermosynechococcus elongatus. Biochemistry. 2013 Dec 03; 52(48):8663-76. PMID: 24215428; PMCID: PMC3932240.
    70. Saunders AH, Golbeck JH, Bryant DA. Characterization of BciB: a ferredoxin-dependent 8-vinyl-protochlorophyllide reductase from the green sulfur bacterium Chloroherpeton thalassium. Biochemistry. 2013 Nov 26; 52(47):8442-51. PMID: 24151992.
      View in: PubMed
    71. Adams PG, Cadby AJ, Robinson B, Tsukatani Y, Tank M, Wen J, Blankenship RE, Bryant DA, Hunter CN. Comparison of the physical characteristics of chlorosomes from three different phyla of green phototrophic bacteria. Biochim Biophys Acta. 2013 Oct; 1827(10):1235-44. PMID: 23867748.
      View in: PubMed
    72. Klatt CG, Inskeep WP, Herrgard MJ, Jay ZJ, Rusch DB, Tringe SG, Niki Parenteau M, Ward DM, Boomer SM, Bryant DA, Miller SR. Community structure and function of high-temperature chlorophototrophic microbial mats inhabiting diverse geothermal environments. Front Microbiol. 2013; 4:106. PMID: 23761787; PMCID: PMC3669762.
    73. Guerra LT, Xu Y, Bennette N, McNeely K, Bryant DA, Dismukes GC. Natural osmolytes are much less effective substrates than glycogen for catabolic energy production in the marine cyanobacterium Synechococcus sp. strain PCC 7002. J Biotechnol. 2013 Jul 10; 166(3):65-75. PMID: 23608552.
      View in: PubMed
    74. Klatt CG, Liu Z, Ludwig M, Kühl M, Jensen SI, Bryant DA, Ward DM. Temporal metatranscriptomic patterning in phototrophic Chloroflexi inhabiting a microbial mat in a geothermal spring. ISME J. 2013 Sep; 7(9):1775-89. PMID: 23575369; PMCID: PMC3749495.
    75. Li H, Frigaard NU, Bryant DA. [2Fe-2S] proteins in Chlorosomes: CsmI and CsmJ participate in light-dependent control of energy transfer in Chlorosomes of Chlorobaculum tepidum. Biochemistry. 2013 Feb 26; 52(8):1321-30. PMID: 23368845.
      View in: PubMed
    76. Johnson TW, Li H, Frigaard NU, Golbeck JH, Bryant DA. [2Fe-2S] proteins in Chlorosomes: redox properties of CsmI, CsmJ, and CsmX of the Chlorosome envelope of Chlorobaculum tepidum. Biochemistry. 2013 Feb 26; 52(8):1331-43. PMID: 23368794.
      View in: PubMed
    77. Orf GS, Tank M, Vogl K, Niedzwiedzki DM, Bryant DA, Blankenship RE. Spectroscopic insights into the decreased efficiency of chlorosomes containing bacteriochlorophyll f. Biochim Biophys Acta. 2013 Apr; 1827(4):493-501. PMID: 23353102.
      View in: PubMed
    78. Xu Y, Guerra LT, Li Z, Ludwig M, Dismukes GC, Bryant DA. Altered carbohydrate metabolism in glycogen synthase mutants of Synechococcus sp. strain PCC 7002: Cell factories for soluble sugars. Metab Eng. 2013 Mar; 16:56-67. PMID: 23262095.
      View in: PubMed
    79. Furumaki S, Yabiku Y, Habuchi S, Tsukatani Y, Bryant DA, Vacha M. Circular Dichroism Measured on Single Chlorosomal Light-Harvesting Complexes of Green Photosynthetic Bacteria. J Phys Chem Lett. 2012 Dec 06; 3(23):3545-9. PMID: 26290985.
      View in: PubMed
    80. Ludwig M, Bryant DA. Synechococcus sp. Strain PCC 7002 Transcriptome: Acclimation to Temperature, Salinity, Oxidative Stress, and Mixotrophic Growth Conditions. Front Microbiol. 2012; 3:354. PMID: 23087677; PMCID: PMC3468840.
    81. Vogl K, Tank M, Orf GS, Blankenship RE, Bryant DA. Bacteriochlorophyll f: properties of chlorosomes containing the "forbidden chlorophyll". Front Microbiol. 2012; 3:298. PMID: 22908012; PMCID: PMC3415949.
    82. Liu Z, Frigaard NU, Vogl K, Iino T, Ohkuma M, Overmann J, Bryant DA. Complete Genome of Ignavibacterium album, a Metabolically Versatile, Flagellated, Facultative Anaerobe from the Phylum Chlorobi. Front Microbiol. 2012; 3:185. PMID: 22661972; PMCID: PMC3362086.
    83. Ganapathy S, Oostergetel GT, Reus M, Tsukatani Y, Gomez Maqueo Chew A, Buda F, Bryant DA, Holzwarth AR, de Groot HJ. Structural variability in wild-type and bchQ bchR mutant chlorosomes of the green sulfur bacterium Chlorobaculum tepidum. Biochemistry. 2012 Jun 05; 51(22):4488-98. PMID: 22577986.
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    84. Ludwig M, Bryant DA. Acclimation of the Global Transcriptome of the Cyanobacterium Synechococcus sp. Strain PCC 7002 to Nutrient Limitations and Different Nitrogen Sources. Front Microbiol. 2012; 3:145. PMID: 22514553; PMCID: PMC3323872.
    85. Liu Z, Klatt CG, Ludwig M, Rusch DB, Jensen SI, Kühl M, Ward DM, Bryant DA. 'Candidatus Thermochlorobacter aerophilum:' an aerobic chlorophotoheterotrophic member of the phylum Chlorobi defined by metagenomics and metatranscriptomics. ISME J. 2012 Oct; 6(10):1869-82. PMID: 22456447; PMCID: PMC3446795.
    86. Wong CY, Alvey RM, Turner DB, Wilk KE, Bryant DA, Curmi PM, Silbey RJ, Scholes GD. Electronic coherence lineshapes reveal hidden excitonic correlations in photosynthetic light harvesting. Nat Chem. 2012 Mar 25; 4(5):396-404. PMID: 22522260.
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    87. Cao L, Bryant DA, Schepmoes AA, Vogl K, Smith RD, Lipton MS, Callister SJ. Comparison of Chloroflexus aurantiacus strain J-10-fl proteomes of cells grown chemoheterotrophically and photoheterotrophically. Photosynth Res. 2012 Feb; 110(3):153-68. PMID: 22249883.
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    88. Garcia Costas AM, Tsukatani Y, Rijpstra WI, Schouten S, Welander PV, Summons RE, Bryant DA. Identification of the bacteriochlorophylls, carotenoids, quinones, lipids, and hopanoids of "Candidatus Chloracidobacterium thermophilum". J Bacteriol. 2012 Mar; 194(5):1158-68. PMID: 22210764; PMCID: PMC3294765.
    89. Kiss H, Nett M, Domin N, Martin K, Maresca JA, Copeland A, Lapidus A, Lucas S, Berry KW, Glavina Del Rio T, Dalin E, Tice H, Pitluck S, Richardson P, Bruce D, Goodwin L, Han C, Detter JC, Schmutz J, Brettin T, Land M, Hauser L, Kyrpides NC, Ivanova N, Göker M, Woyke T, Klenk HP, Bryant DA. Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95(T)). Stand Genomic Sci. 2011 Dec 31; 5(3):356-70. PMID: 22675585; PMCID: PMC3368417.
    90. Tsukatani Y, Romberger SP, Golbeck JH, Bryant DA. Isolation and characterization of homodimeric type-I reaction center complex from Candidatus Chloracidobacterium thermophilum, an aerobic chlorophototroph. J Biol Chem. 2012 Feb 17; 287(8):5720-32. PMID: 22184116; PMCID: PMC3285344.
    91. Zhang S, Bryant DA. The tricarboxylic acid cycle in cyanobacteria. Science. 2011 Dec 16; 334(6062):1551-3. PMID: 22174252.
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    92. Lubner CE, Applegate AM, Knörzer P, Ganago A, Bryant DA, Happe T, Golbeck JH. Solar hydrogen-producing bionanodevice outperforms natural photosynthesis. Proc Natl Acad Sci U S A. 2011 Dec 27; 108(52):20988-91. PMID: 22160679; PMCID: PMC3248548.
    93. Klotz MG, Bryant DA, Hanson TE. The microbial sulfur cycle. Front Microbiol. 2011; 2:241. PMID: 22144979; PMCID: PMC3228992.
    94. Vogl K, Bryant DA. Biosynthesis of the biomarker okenone: ?-ring formation. Geobiology. 2012 May; 10(3):205-15. PMID: 22070388.
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    95. Garcia Costas AM, Tsukatani Y, Romberger SP, Oostergetel GT, Boekema EJ, Golbeck JH, Bryant DA. Ultrastructural analysis and identification of envelope proteins of "Candidatus Chloracidobacterium thermophilum" chlorosomes. J Bacteriol. 2011 Dec; 193(23):6701-11. PMID: 21965575; PMCID: PMC3232888.
    96. Hamilton TL, Vogl K, Bryant DA, Boyd ES, Peters JW. Environmental constraints defining the distribution, composition, and evolution of chlorophototrophs in thermal features of Yellowstone National Park. Geobiology. 2012 May; 10(3):236-49. PMID: 21955797.
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    97. Garcia Costas AM, Liu Z, Tomsho LP, Schuster SC, Ward DM, Bryant DA. Complete genome of Candidatus Chloracidobacterium thermophilum, a chlorophyll-based photoheterotroph belonging to the phylum Acidobacteria. Environ Microbiol. 2012 Jan; 14(1):177-90. PMID: 21951563.
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    98. Vogl K, Bryant DA. Elucidation of the biosynthetic pathway for Okenone in Thiodictyon sp. CAD16 leads to the discovery of two novel carotene ketolases. J Biol Chem. 2011 Nov 04; 286(44):38521-32. PMID: 21921032; PMCID: PMC3207450.
    99. Carrieri D, Ananyev G, Lenz O, Bryant DA, Dismukes GC. Contribution of a sodium ion gradient to energy conservation during fermentation in the cyanobacterium Arthrospira (Spirulina) maxima CS-328. Appl Environ Microbiol. 2011 Oct; 77(20):7185-94. PMID: 21890670; PMCID: PMC3194876.
    100. Biswas A, Boutaghou MN, Alvey RM, Kronfel CM, Cole RB, Bryant DA, Schluchter WM. Characterization of the activities of the CpeY, CpeZ, and CpeS bilin lyases in phycoerythrin biosynthesis in Fremyella diplosiphon strain UTEX 481. J Biol Chem. 2011 Oct 14; 286(41):35509-21. PMID: 21865169; PMCID: PMC3195565.
    101. Liu Z, Bryant DA. Multiple types of 8-vinyl reductases for (bacterio)chlorophyll biosynthesis occur in many green sulfur bacteria. J Bacteriol. 2011 Sep; 193(18):4996-8. PMID: 21764919; PMCID: PMC3165659.
    102. Hamilton TL, Ludwig M, Dixon R, Boyd ES, Dos Santos PC, Setubal JC, Bryant DA, Dean DR, Peters JW. Transcriptional profiling of nitrogen fixation in Azotobacter vinelandii. J Bacteriol. 2011 Sep; 193(17):4477-86. PMID: 21724999; PMCID: PMC3165507.
    103. Hamilton TL, Jacobson M, Ludwig M, Boyd ES, Bryant DA, Dean DR, Peters JW. Differential accumulation of nif structural gene mRNA in Azotobacter vinelandii. J Bacteriol. 2011 Sep; 193(17):4534-6. PMID: 21725008; PMCID: PMC3165501.
    104. Klatt CG, Wood JM, Rusch DB, Bateson MM, Hamamura N, Heidelberg JF, Grossman AR, Bhaya D, Cohan FM, Kühl M, Bryant DA, Ward DM. Community ecology of hot spring cyanobacterial mats: predominant populations and their functional potential. ISME J. 2011 Aug; 5(8):1262-78. PMID: 21697961; PMCID: PMC3146275.
    105. Liu Z, Klatt CG, Wood JM, Rusch DB, Ludwig M, Wittekindt N, Tomsho LP, Schuster SC, Ward DM, Bryant DA. Metatranscriptomic analyses of chlorophototrophs of a hot-spring microbial mat. ISME J. 2011 Aug; 5(8):1279-90. PMID: 21697962; PMCID: PMC3146272.
    106. Gregersen LH, Bryant DA, Frigaard NU. Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria. Front Microbiol. 2011; 2:116. PMID: 21833341; PMCID: PMC3153061.
    107. Alvey RM, Biswas A, Schluchter WM, Bryant DA. Attachment of noncognate chromophores to CpcA of Synechocystis sp. PCC 6803 and Synechococcus sp. PCC 7002 by heterologous expression in Escherichia coli. Biochemistry. 2011 Jun 07; 50(22):4890-902. PMID: 21553904.
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    108. Liu Z, Bryant DA. Identification of a gene essential for the first committed step in the biosynthesis of bacteriochlorophyll c. J Biol Chem. 2011 Jun 24; 286(25):22393-402. PMID: 21550979; PMCID: PMC3283191.
    109. Furumaki S, Vacha F, Habuchi S, Tsukatani Y, Bryant DA, Vacha M. Absorption linear dichroism measured directly on a single light-harvesting system: the role of disorder in chlorosomes of green photosynthetic bacteria. J Am Chem Soc. 2011 May 04; 133(17):6703-10. PMID: 21476570.
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    110. Cannon WR, Rawlins MM, Baxter DJ, Callister SJ, Lipton MS, Bryant DA. Large improvements in MS/MS-based peptide identification rates using a hybrid analysis. J Proteome Res. 2011 May 06; 10(5):2306-17. PMID: 21391700.
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    111. Ludwig M, Bryant DA. Transcription Profiling of the Model Cyanobacterium Synechococcus sp. Strain PCC 7002 by Next-Gen (SOLiD™) Sequencing of cDNA. Front Microbiol. 2011; 2:41. PMID: 21779275; PMCID: PMC3133671.
    112. McNeely K, Xu Y, Ananyev G, Bennette N, Bryant DA, Dismukes GC. Synechococcus sp. strain PCC 7002 nifJ mutant lacking pyruvate:ferredoxin oxidoreductase. Appl Environ Microbiol. 2011 Apr; 77(7):2435-44. PMID: 21317262; PMCID: PMC3067432.
    113. Alvey RM, Biswas A, Schluchter WM, Bryant DA. Effects of modified Phycobilin biosynthesis in the Cyanobacterium Synechococcus sp. Strain PCC 7002. J Bacteriol. 2011 Apr; 193(7):1663-71. PMID: 21296968; PMCID: PMC3067670.
    114. Xu Y, Alvey RM, Byrne PO, Graham JE, Shen G, Bryant DA. Expression of genes in cyanobacteria: adaptation of endogenous plasmids as platforms for high-level gene expression in Synechococcus sp. PCC 7002. Methods Mol Biol. 2011; 684:273-93. PMID: 20960136.
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    115. Lubner CE, Knörzer P, Silva PJ, Vincent KA, Happe T, Bryant DA, Golbeck JH. Wiring an [FeFe]-hydrogenase with photosystem I for light-induced hydrogen production. Biochemistry. 2010 Dec 07; 49(48):10264-6. PMID: 21058656.
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    116. Wen J, Tsukatani Y, Cui W, Zhang H, Gross ML, Bryant DA, Blankenship RE. Structural model and spectroscopic characteristics of the FMO antenna protein from the aerobic chlorophototroph, Candidatus Chloracidobacterium thermophilum. Biochim Biophys Acta. 2011 Jan; 1807(1):157-64. PMID: 20875391; PMCID: PMC3947814.
    117. Scott NL, Xu Y, Shen G, Vuletich DA, Falzone CJ, Li Z, Ludwig M, Pond MP, Preimesberger MR, Bryant DA, Lecomte JT. Functional and structural characterization of the 2/2 hemoglobin from Synechococcus sp. PCC 7002. Biochemistry. 2010 Aug 24; 49(33):7000-11. PMID: 20669934.
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    118. Brown II, Bryant DA, Casamatta D, Thomas-Keprta KL, Sarkisova SA, Shen G, Graham JE, Boyd ES, Peters JW, Garrison DH, McKay DS. Polyphasic characterization of a thermotolerant siderophilic filamentous cyanobacterium that produces intracellular iron deposits. Appl Environ Microbiol. 2010 Oct; 76(19):6664-72. PMID: 20709851; PMCID: PMC2950469.
    119. Carrieri D, Momot D, Brasg IA, Ananyev G, Lenz O, Bryant DA, Dismukes GC. Boosting autofermentation rates and product yields with sodium stress cycling: application to production of renewable fuels by cyanobacteria. Appl Environ Microbiol. 2010 Oct; 76(19):6455-62. PMID: 20693449; PMCID: PMC2950447.
    120. Zhu Y, Graham JE, Ludwig M, Xiong W, Alvey RM, Shen G, Bryant DA. Roles of xanthophyll carotenoids in protection against photoinhibition and oxidative stress in the cyanobacterium Synechococcus sp. strain PCC 7002. Arch Biochem Biophys. 2010 Dec 01; 504(1):86-99. PMID: 20638360.
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    121. McNeely K, Xu Y, Bennette N, Bryant DA, Dismukes GC. Redirecting reductant flux into hydrogen production via metabolic engineering of fermentative carbon metabolism in a cyanobacterium. Appl Environ Microbiol. 2010 Aug; 76(15):5032-8. PMID: 20543051; PMCID: PMC2916493.
    122. van der Meer MT, Klatt CG, Wood J, Bryant DA, Bateson MM, Lammerts L, Schouten S, Damsté JS, Madigan MT, Ward DM. Cultivation and genomic, nutritional, and lipid biomarker characterization of Roseiflexus strains closely related to predominant in situ populations inhabiting Yellowstone hot spring microbial mats. J Bacteriol. 2010 Jun; 192(12):3033-42. PMID: 20363941; PMCID: PMC2901690.
    123. Wenter R, Hütz K, Dibbern D, Li T, Reisinger V, Plöscher M, Eichacker L, Eddie B, Hanson T, Bryant DA, Overmann J. Expression-based identification of genetic determinants of the bacterial symbiosis 'Chlorochromatium aggregatum'. Environ Microbiol. 2010 Aug; 12(8):2259-76. PMID: 21966918.
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    124. Biswas A, Vasquez YM, Dragomani TM, Kronfel ML, Williams SR, Alvey RM, Bryant DA, Schluchter WM. Biosynthesis of cyanobacterial phycobiliproteins in Escherichia coli: chromophorylation efficiency and specificity of all bilin lyases from Synechococcus sp. strain PCC 7002. Appl Environ Microbiol. 2010 May; 76(9):2729-39. PMID: 20228104; PMCID: PMC2863458.
    125. Lubner CE, Grimme R, Bryant DA, Golbeck JH. Wiring photosystem I for direct solar hydrogen production. Biochemistry. 2010 Jan 26; 49(3):404-14. PMID: 19947649.
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    126. Tsukatani Y, Wen J, Blankenship RE, Bryant DA. Characterization of the FMO protein from the aerobic chlorophototroph, Candidatus Chloracidobacterium thermophilum. Photosynth Res. 2010 Jun; 104(2-3):201-9. PMID: 20094789.
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    127. Schluchter WM, Shen G, Alvey RM, Biswas A, Saunée NA, Williams SR, Mille CA, Bryant DA. Phycobiliprotein biosynthesis in cyanobacteria: structure and function of enzymes involved in post-translational modification. Adv Exp Med Biol. 2010; 675:211-28. PMID: 20532743.
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    128. Li H, Jubelirer S, Garcia Costas AM, Frigaard NU, Bryant DA. Multiple antioxidant proteins protect Chlorobaculum tepidum against oxygen and reactive oxygen species. Arch Microbiol. 2009 Nov; 191(11):853-67. PMID: 19784828.
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    129. Li H, Bryant DA. Envelope proteins of the CsmB/CsmF and CsmC/CsmD motif families influence the size, shape, and composition of chlorosomes in Chlorobaculum tepidum. J Bacteriol. 2009 Nov; 191(22):7109-20. PMID: 19749040; PMCID: PMC2772486.
    130. Gomez Maqueo Chew A, Frigaard NU, Bryant DA. Mutational analysis of three bchH paralogs in (bacterio-)chlorophyll biosynthesis in Chlorobaculum tepidum. Photosynth Res. 2009 Jul; 101(1):21-34. PMID: 19568953.
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    131. Ganapathy S, Oostergetel GT, Wawrzyniak PK, Reus M, Gomez Maqueo Chew A, Buda F, Boekema EJ, Bryant DA, Holzwarth AR, de Groot HJ. Alternating syn-anti bacteriochlorophylls form concentric helical nanotubes in chlorosomes. Proc Natl Acad Sci U S A. 2009 May 26; 106(21):8525-30. PMID: 19435848; PMCID: PMC2680731.
    132. Dong C, Tang A, Zhao J, Mullineaux CW, Shen G, Bryant DA. ApcD is necessary for efficient energy transfer from phycobilisomes to photosystem I and helps to prevent photoinhibition in the cyanobacterium Synechococcus sp. PCC 7002. Biochim Biophys Acta. 2009 Sep; 1787(9):1122-8. PMID: 19397890.
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    133. Graham JE, Bryant DA. The biosynthetic pathway for myxol-2' fucoside (myxoxanthophyll) in the cyanobacterium Synechococcus sp. strain PCC 7002. J Bacteriol. 2009 May; 191(10):3292-300. PMID: 19304845; PMCID: PMC2687168.
    134. Wu D, Raymond J, Wu M, Chatterji S, Ren Q, Graham JE, Bryant DA, Robb F, Colman A, Tallon LJ, Badger JH, Madupu R, Ward NL, Eisen JA. Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum. PLoS One. 2009; 4(1):e4207. PMID: 19148287; PMCID: PMC2615216.
    135. Agalarov R, Byrdin M, Rappaport F, Shen G, Bryant DA, van der Est A, Golbeck JH. Removal of the PsaF polypeptide biases electron transfer in favor of the PsaB branch of cofactors in Triton X-100 photosystem I complexes from Synechococcus sp. PCC 7002. Photochem Photobiol. 2008 Nov-Dec; 84(6):1371-80. PMID: 19067958.
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    136. Graham JE, Bryant DA. The Biosynthetic pathway for synechoxanthin, an aromatic carotenoid synthesized by the euryhaline, unicellular cyanobacterium Synechococcus sp. strain PCC 7002. J Bacteriol. 2008 Dec; 190(24):7966-74. PMID: 18849428; PMCID: PMC2593218.
    137. Graham JE, Lecomte JT, Bryant DA. Synechoxanthin, an aromatic C40 xanthophyll that is a major carotenoid in the cyanobacterium Synechococcus sp. PCC 7002. J Nat Prod. 2008 Sep; 71(9):1647-50. PMID: 18715035.
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    138. Jin Z, Heinnickel M, Krebs C, Shen G, Golbeck JH, Bryant DA. Biogenesis of iron-sulfur clusters in photosystem I: holo-NfuA from the cyanobacterium Synechococcus sp. PCC 7002 rapidly and efficiently transfers [4Fe-4S] clusters to apo-PsaC in vitro. J Biol Chem. 2008 Oct 17; 283(42):28426-35. PMID: 18694929; PMCID: PMC2661401.
    139. Maresca JA, Romberger SP, Bryant DA. Isorenieratene biosynthesis in green sulfur bacteria requires the cooperative actions of two carotenoid cyclases. J Bacteriol. 2008 Oct; 190(19):6384-91. PMID: 18676669; PMCID: PMC2565998.
    140. Maresca JA, Graham JE, Bryant DA. The biochemical basis for structural diversity in the carotenoids of chlorophototrophic bacteria. Photosynth Res. 2008 Aug; 97(2):121-40. PMID: 18535920.
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    141. Miller CA, Leonard HS, Pinsky IG, Turner BM, Williams SR, Harrison L, Fletcher AF, Shen G, Bryant DA, Schluchter WM. Biogenesis of phycobiliproteins. III. CpcM is the asparagine methyltransferase for phycobiliprotein beta-subunits in cyanobacteria. J Biol Chem. 2008 Jul 11; 283(28):19293-300. PMID: 18482977.
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    142. Shen G, Leonard HS, Schluchter WM, Bryant DA. CpcM posttranslationally methylates asparagine-71/72 of phycobiliprotein beta subunits in Synechococcus sp. strain PCC 7002 and Synechocystis sp. strain PCC 6803. J Bacteriol. 2008 Jul; 190(14):4808-17. PMID: 18469097; PMCID: PMC2447021.
    143. Zhao F, Zhao F, Li T, Bryant DA. A new pheromone trail-based genetic algorithm for comparative genome assembly. Nucleic Acids Res. 2008 Jun; 36(10):3455-62. PMID: 18445633; PMCID: PMC2425481.
    144. Grimme RA, Lubner CE, Bryant DA, Golbeck JH. Photosystem I/molecular wire/metal nanoparticle bioconjugates for the photocatalytic production of H2. J Am Chem Soc. 2008 May 21; 130(20):6308-9. PMID: 18439011.
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    145. Saunée NA, Williams SR, Bryant DA, Schluchter WM. Biogenesis of phycobiliproteins: II. CpcS-I and CpcU comprise the heterodimeric bilin lyase that attaches phycocyanobilin to CYS-82 OF beta-phycocyanin and CYS-81 of allophycocyanin subunits in Synechococcus sp. PCC 7002. J Biol Chem. 2008 Mar 21; 283(12):7513-22. PMID: 18199753; PMCID: PMC2276331.
    146. Shen G, Schluchter WM, Bryant DA. Biogenesis of phycobiliproteins: I. cpcS-I and cpcU mutants of the cyanobacterium Synechococcus sp. PCC 7002 define a heterodimeric phyococyanobilin lyase specific for beta-phycocyanin and allophycocyanin subunits. J Biol Chem. 2008 Mar 21; 283(12):7503-12. PMID: 18199754.
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    147. Gomez Maqueo Chew A, Frigaard NU, Bryant DA. Identification of the bchP gene, encoding geranylgeranyl reductase in Chlorobaculum tepidum. J Bacteriol. 2008 Jan; 190(2):747-9. PMID: 17993528; PMCID: PMC2223686.
    148. Oostergetel GT, Reus M, Gomez Maqueo Chew A, Bryant DA, Boekema EJ, Holzwarth AR. Long-range organization of bacteriochlorophyll in chlorosomes of Chlorobium tepidum investigated by cryo-electron microscopy. FEBS Lett. 2007 Nov 27; 581(28):5435-9. PMID: 17981156.
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    149. Shen G, Balasubramanian R, Wang T, Wu Y, Hoffart LM, Krebs C, Bryant DA, Golbeck JH. SufR coordinates two [4Fe-4S]2+, 1+ clusters and functions as a transcriptional repressor of the sufBCDS operon and an autoregulator of sufR in cyanobacteria. J Biol Chem. 2007 Nov 02; 282(44):31909-19. PMID: 17827500.
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    150. Klatt CG, Bryant DA, Ward DM. Comparative genomics provides evidence for the 3-hydroxypropionate autotrophic pathway in filamentous anoxygenic phototrophic bacteria and in hot spring microbial mats. Environ Microbiol. 2007 Aug; 9(8):2067-78. PMID: 17635550.
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    151. Bryant DA, Costas AM, Maresca JA, Chew AG, Klatt CG, Bateson MM, Tallon LJ, Hostetler J, Nelson WC, Heidelberg JF, Ward DM. Candidatus Chloracidobacterium thermophilum: an aerobic phototrophic Acidobacterium. Science. 2007 Jul 27; 317(5837):523-6. PMID: 17656724.
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    152. Maresca JA, Graham JE, Wu M, Eisen JA, Bryant DA. Identification of a fourth family of lycopene cyclases in photosynthetic bacteria. Proc Natl Acad Sci U S A. 2007 Jul 10; 104(28):11784-9. PMID: 17606904; PMCID: PMC1905924.
    153. Gomez Maqueo Chew A, Frigaard NU, Bryant DA. Bacteriochlorophyllide c C-8(2) and C-12(1) methyltransferases are essential for adaptation to low light in Chlorobaculum tepidum. J Bacteriol. 2007 Sep; 189(17):6176-84. PMID: 17586634; PMCID: PMC1951906.
    154. Ikonen TP, Li H, Psencík J, Laurinmäki PA, Butcher SJ, Frigaard NU, Serimaa RE, Bryant DA, Tuma R. X-ray scattering and electron cryomicroscopy study on the effect of carotenoid biosynthesis to the structure of Chlorobium tepidum chlorosomes. Biophys J. 2007 Jul 15; 93(2):620-8. PMID: 17468163; PMCID: PMC1896238.
    155. Kim H, Li H, Maresca JA, Bryant DA, Savikhin S. Triplet exciton formation as a novel photoprotection mechanism in chlorosomes of Chlorobium tepidum. Biophys J. 2007 Jul 01; 93(1):192-201. PMID: 17434948; PMCID: PMC1914439.
    156. Inoue-Sakamoto K, Gruber TM, Christensen SK, Arima H, Sakamoto T, Bryant DA. Group 3 sigma factors in the marine cyanobacterium Synechococcus sp. strain PCC 7002 are required for growth at low temperature. J Gen Appl Microbiol. 2007 Apr; 53(2):89-104. PMID: 17575449.
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    157. Woodger FJ, Bryant DA, Price GD. Transcriptional regulation of the CO2-concentrating mechanism in a euryhaline, coastal marine cyanobacterium, Synechococcus sp. Strain PCC 7002: role of NdhR/CcmR. J Bacteriol. 2007 May; 189(9):3335-47. PMID: 17307862; PMCID: PMC1855907.
    158. Antonkine ML, Maes EM, Czernuszewicz RS, Breitenstein C, Bill E, Falzone CJ, Balasubramanian R, Lubner C, Bryant DA, Golbeck JH. Chemical rescue of a site-modified ligand to a [4Fe-4S] cluster in PsaC, a bacterial-like dicluster ferredoxin bound to Photosystem I. Biochim Biophys Acta. 2007 Jun; 1767(6):712-24. PMID: 17434441.
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    159. Chew AG, Bryant DA. Chlorophyll biosynthesis in bacteria: the origins of structural and functional diversity. Annu Rev Microbiol. 2007; 61:113-29. PMID: 17506685.
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    160. Chew AG, Bryant DA. Characterization of a plant-like protochlorophyllide a divinyl reductase in green sulfur bacteria. J Biol Chem. 2007 Feb 02; 282(5):2967-75. PMID: 17148453.
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    161. Bryant DA, Frigaard NU. Prokaryotic photosynthesis and phototrophy illuminated. Trends Microbiol. 2006 Nov; 14(11):488-96. PMID: 16997562.
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    162. Maresca JA, Bryant DA. Two genes encoding new carotenoid-modifying enzymes in the green sulfur bacterium Chlorobium tepidum. J Bacteriol. 2006 Sep; 188(17):6217-23. PMID: 16923888; PMCID: PMC1595356.
    163. Li H, Frigaard NU, Bryant DA. Molecular contacts for chlorosome envelope proteins revealed by cross-linking studies with chlorosomes from Chlorobium tepidum. Biochemistry. 2006 Aug 01; 45(30):9095-103. PMID: 16866355.
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    164. Ley RE, Harris JK, Wilcox J, Spear JR, Miller SR, Bebout BM, Maresca JA, Bryant DA, Sogin ML, Pace NR. Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat. Appl Environ Microbiol. 2006 May; 72(5):3685-95. PMID: 16672518; PMCID: PMC1472358.
    165. Balasubramanian R, Shen G, Bryant DA, Golbeck JH. Regulatory roles for IscA and SufA in iron homeostasis and redox stress responses in the cyanobacterium Synechococcus sp. strain PCC 7002. J Bacteriol. 2006 May; 188(9):3182-91. PMID: 16621810; PMCID: PMC1447454.
    166. Nomura CT, Sakamoto T, Bryant DA. Roles for heme-copper oxidases in extreme high-light and oxidative stress response in the cyanobacterium Synechococcus sp. PCC 7002. Arch Microbiol. 2006 Jun; 185(6):471-9. PMID: 16775753.
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    167. Shen G, Saunée NA, Williams SR, Gallo EF, Schluchter WM, Bryant DA. Identification and characterization of a new class of bilin lyase: the cpcT gene encodes a bilin lyase responsible for attachment of phycocyanobilin to Cys-153 on the beta-subunit of phycocyanin in Synechococcus sp. PCC 7002. J Biol Chem. 2006 Jun 30; 281(26):17768-78. PMID: 16644722.
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    168. Sakuragi Y, Maeda H, Dellapenna D, Bryant DA. alpha-Tocopherol plays a role in photosynthesis and macronutrient homeostasis of the cyanobacterium Synechocystis sp. PCC 6803 that is independent of its antioxidant function. Plant Physiol. 2006 Jun; 141(2):508-21. PMID: 16565298; PMCID: PMC1475434.
    169. Nomura CT, Persson S, Shen G, Inoue-Sakamoto K, Bryant DA. Characterization of two cytochrome oxidase operons in the marine cyanobacterium Synechococcus sp. PCC 7002: inactivation of ctaDI affects the PS I:PS II ratio. Photosynth Res. 2006 Feb; 87(2):215-28. PMID: 16437183.
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    170. Frigaard NU, Li H, Martinsson P, Das SK, Frank HA, Aartsma TJ, Bryant DA. Isolation and characterization of carotenosomes from a bacteriochlorophyll c-less mutant of Chlorobium tepidum. Photosynth Res. 2005 Nov; 86(1-2):101-11. PMID: 16172929.
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    171. Mimuro M, Tsuchiya T, Inoue H, Sakuragi Y, Itoh Y, Gotoh T, Miyashita H, Bryant DA, Kobayashi M. The secondary electron acceptor of photosystem I in Gloeobacter violaceus PCC 7421 is menaquinone-4 that is synthesized by a unique but unknown pathway. FEBS Lett. 2005 Jul 04; 579(17):3493-6. PMID: 15955532.
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    172. Maeda H, Sakuragi Y, Bryant DA, Dellapenna D. Tocopherols protect Synechocystis sp. strain PCC 6803 from lipid peroxidation. Plant Physiol. 2005 Jul; 138(3):1422-35. PMID: 15965015; PMCID: PMC1176414.
    173. Sakuragi Y, Zybailov B, Shen G, Bryant DA, Golbeck JH, Diner BA, Karygina I, Pushkar Y, Stehlik D. Recruitment of a foreign quinone into the A1 site of photosystem I. Characterization of a menB rubA double deletion mutant in Synechococcus sp. PCC 7002 devoid of FX, FA, and FB and containing plastoquinone or exchanged 9,10-anthraquinone. J Biol Chem. 2005 Apr 01; 280(13):12371-81. PMID: 15681848.
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    174. Zambelli B, Stola M, Musiani F, De Vriendt K, Samyn B, Devreese B, Van Beeumen J, Turano P, Dikiy A, Bryant DA, Ciurli S. UreG, a chaperone in the urease assembly process, is an intrinsically unstructured GTPase that specifically binds Zn2+. J Biol Chem. 2005 Feb 11; 280(6):4684-95. PMID: 15542602.
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    175. Frigaard NU, Bryant DA. Seeing green bacteria in a new light: genomics-enabled studies of the photosynthetic apparatus in green sulfur bacteria and filamentous anoxygenic phototrophic bacteria. Arch Microbiol. 2004 Oct; 182(4):265-76. PMID: 15340781.
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    176. Frigaard NU, Maresca JA, Yunker CE, Jones AD, Bryant DA. Genetic manipulation of carotenoid biosynthesis in the green sulfur bacterium Chlorobium tepidum. J Bacteriol. 2004 Aug; 186(16):5210-20. PMID: 15292122; PMCID: PMC490927.
    177. Maresca JA, Gomez Maqueo Chew A, Ponsatí MR, Frigaard NU, Ormerod JG, Bryant DA. The bchU gene of Chlorobium tepidum encodes the c-20 methyltransferase in bacteriochlorophyll c biosynthesis. J Bacteriol. 2004 May; 186(9):2558-66. PMID: 15090495; PMCID: PMC387796.
    178. Van Der Est A, Valieva AI, Kandrashkin YE, Shen G, Bryant DA, Golbeck JH. Removal of PsaF alters forward electron transfer in photosystem I: evidence for fast reoxidation of QK-A in subunit deletion mutants of Synechococcus sp. PCC 7002. Biochemistry. 2004 Feb 10; 43(5):1264-75. PMID: 14756562.
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    179. Wang T, Shen G, Balasubramanian R, McIntosh L, Bryant DA, Golbeck JH. The sufR gene (sll0088 in Synechocystis sp. strain PCC 6803) functions as a repressor of the sufBCDS operon in iron-sulfur cluster biogenesis in cyanobacteria. J Bacteriol. 2004 Feb; 186(4):956-67. PMID: 14761990; PMCID: PMC344230.
    180. Frigaard NU, Li H, Milks KJ, Bryant DA. Nine mutants of Chlorobium tepidum each unable to synthesize a different chlorosome protein still assemble functional chlorosomes. J Bacteriol. 2004 Feb; 186(3):646-53. PMID: 14729689; PMCID: PMC321489.
    181. Frigaard NU, Sakuragi Y, Bryant DA. Gene inactivation in the cyanobacterium Synechococcus sp. PCC 7002 and the green sulfur bacterium Chlorobium tepidum using in vitro-made DNA constructs and natural transformation. Methods Mol Biol. 2004; 274:325-40. PMID: 15187290.
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    182. Huang C, Yuan X, Zhao J, Bryant DA. Kinetic analyses of state transitions of the cyanobacterium Synechococcus sp. PCC 7002 and its mutant strains impaired in electron transport. Biochim Biophys Acta. 2003 Dec 08; 1607(2-3):121-30. PMID: 14670602.
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    183. Gómez-Lojero C, Pérez-Gómez B, Shen G, Schluchter WM, Bryant DA. Interaction of ferredoxin:NADP+ oxidoreductase with phycobilisomes and phycobilisome substructures of the cyanobacterium Synechococcus sp. strain PCC 7002. Biochemistry. 2003 Dec 02; 42(47):13800-11. PMID: 14636046.
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    184. Cheng Z, Sattler S, Maeda H, Sakuragi Y, Bryant DA, DellaPenna D. Highly divergent methyltransferases catalyze a conserved reaction in tocopherol and plastoquinone synthesis in cyanobacteria and photosynthetic eukaryotes. Plant Cell. 2003 Oct; 15(10):2343-56. PMID: 14508009; PMCID: PMC197300.
    185. Bryant DA. The beauty in small things revealed. Proc Natl Acad Sci U S A. 2003 Aug 19; 100(17):9647-9. PMID: 12917493; PMCID: PMC187798.
    186. Yu J, Shen G, Wang T, Bryant DA, Golbeck JH, McIntosh L. Suppressor mutations in the study of photosystem I biogenesis: sll0088 is a previously unidentified gene involved in reaction center accumulation in Synechocystis sp. strain PCC 6803. J Bacteriol. 2003 Jul; 185(13):3878-87. PMID: 12813082; PMCID: PMC161560.
    187. Frigaard NU, Chew AG, Li H, Maresca JA, Bryant DA. Chlorobium tepidum: insights into the structure, physiology, and metabolism of a green sulfur bacterium derived from the complete genome sequence. Photosynth Res. 2003; 78(2):93-117. PMID: 16245042.
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    188. Bryant DA, Vassilieva EV, Frigaard NU, Li H. Selective protein extraction from Chlorobium tepidum chlorosomes using detergents. Evidence that CsmA forms multimers and binds bacteriochlorophyll a. Biochemistry. 2002 Dec 03; 41(48):14403-11. PMID: 12450407.
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    189. Eisen JA, Nelson KE, Paulsen IT, Heidelberg JF, Wu M, Dodson RJ, Deboy R, Gwinn ML, Nelson WC, Haft DH, Hickey EK, Peterson JD, Durkin AS, Kolonay JL, Yang F, Holt I, Umayam LA, Mason T, Brenner M, Shea TP, Parksey D, Nierman WC, Feldblyum TV, Hansen CL, Craven MB, Radune D, Vamathevan J, Khouri H, White O, Gruber TM, Ketchum KA, Venter JC, Tettelin H, Bryant DA, Fraser CM. The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium. Proc Natl Acad Sci U S A. 2002 Jul 09; 99(14):9509-14. PMID: 12093901; PMCID: PMC123171.
    190. Camarero JA, Shekhtman A, Campbell EA, Chlenov M, Gruber TM, Bryant DA, Darst SA, Cowburn D, Muir TW. Autoregulation of a bacterial sigma factor explored by using segmental isotopic labeling and NMR. Proc Natl Acad Sci U S A. 2002 Jun 25; 99(13):8536-41. PMID: 12084914; PMCID: PMC124302.
    191. Scott NL, Falzone CJ, Vuletich DA, Zhao J, Bryant DA, Lecomte JT. Truncated hemoglobin from the cyanobacterium Synechococcus sp. PCC 7002: evidence for hexacoordination and covalent adduct formation in the ferric recombinant protein. Biochemistry. 2002 Jun 04; 41(22):6902-10. PMID: 12033922.
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    192. Frigaard NU, Voigt GD, Bryant DA. Chlorobium tepidum mutant lacking bacteriochlorophyll c made by inactivation of the bchK gene, encoding bacteriochlorophyll c synthase. J Bacteriol. 2002 Jun; 184(12):3368-76. PMID: 12029054; PMCID: PMC135091.
    193. Vassilieva EV, Stirewalt VL, Jakobs CU, Frigaard NU, Inoue-Sakamoto K, Baker MA, Sotak A, Bryant DA. Subcellular localization of chlorosome proteins in Chlorobium tepidum and characterization of three new chlorosome proteins: CsmF, CsmH, and CsmX. Biochemistry. 2002 Apr 02; 41(13):4358-70. PMID: 11914082.
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    194. Shen G, Zhao J, Reimer SK, Antonkine ML, Cai Q, Weiland SM, Golbeck JH, Bryant DA. Assembly of photosystem I. I. Inactivation of the rubA gene encoding a membrane-associated rubredoxin in the cyanobacterium Synechococcus sp. PCC 7002 causes a loss of photosystem I activity. J Biol Chem. 2002 Jun 07; 277(23):20343-54. PMID: 11914373.
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    195. Shen G, Antonkine ML, van der Est A, Vassiliev IR, Brettel K, Bittl R, Zech SG, Zhao J, Stehlik D, Bryant DA, Golbeck JH. Assembly of photosystem I. II. Rubredoxin is required for the in vivo assembly of F(X) in Synechococcus sp. PCC 7002 as shown by optical and EPR spectroscopy. J Biol Chem. 2002 Jun 07; 277(23):20355-66. PMID: 11914374.
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    196. Ciurli S, Safarov N, Miletti S, Dikiy A, Christensen SK, Kornetzky K, Bryant DA, Vandenberghe I, Devreese B, Samyn B, Remaut H, van Beeumen J. Molecular characterization of Bacillus pasteurii UreE, a metal-binding chaperone for the assembly of the urease active site. J Biol Inorg Chem. 2002 Jun; 7(6):623-31. PMID: 12072968.
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    197. Antonkine ML, Liu G, Bentrop D, Bryant DA, Bertini I, Luchinat C, Golbeck JH, Stehlik D. Solution structure of the unbound, oxidized Photosystem I subunit PsaC, containing [4Fe-4S] clusters F(A) and F(B): a conformational change occurs upon binding to photosystem I. J Biol Inorg Chem. 2002 Apr; 7(4-5):461-72. PMID: 11941504.
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    198. Sakuragi Y, Zybailov B, Shen G, Jones AD, Chitnis PR, van der Est A, Bittl R, Zech S, Stehlik D, Golbeck JH, Bryant DA. Insertional inactivation of the menG gene, encoding 2-phytyl-1,4-naphthoquinone methyltransferase of Synechocystis sp. PCC 6803, results in the incorporation of 2-phytyl-1,4-naphthoquinone into the A(1) site and alteration of the equilibrium constant between A(1) and F(X) in photosystem I. Biochemistry. 2002 Jan 08; 41(1):394-405. PMID: 11772039.
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    199. Sakamoto T, Bryant DA. Synergistic effect of high-light and low temperature on cell growth of the Delta12 fatty acid desaturase mutant in Synechococcus sp. PCC 7002. Photosynth Res. 2002; 72(3):231-42. PMID: 16228522.
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    200. Vassilieva EV, Ormerod JG, Bryant DA. Biosynthesis of chlorosome proteins is not inhibited in acetylene-treated cultures of Chlorobium vibrioforme. Photosynth Res. 2002; 71(1-2):69-81. PMID: 16228502.
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    201. Bertini I, Bryant DA, Ciurli S, Dikiy A, Fernández CO, Luchinat C, Safarov N, Vila AJ, Zhao J. Backbone dynamics of plastocyanin in both oxidation states. Solution structure of the reduced form and comparison with the oxidized state. J Biol Chem. 2001 Dec 14; 276(50):47217-26. PMID: 11509552.
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    202. Zhao J, Shen G, Bryant DA. Photosystem stoichiometry and state transitions in a mutant of the cyanobacterium Synechococcus sp. PCC 7002 lacking phycocyanin. Biochim Biophys Acta. 2001 Jun 01; 1505(2-3):248-57. PMID: 11334789.
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    203. Frigaard NU, Bryant DA. Chromosomal gene inactivation in the green sulfur bacterium Chlorobium tepidum by natural transformation. Appl Environ Microbiol. 2001 Jun; 67(6):2538-44. PMID: 11375161; PMCID: PMC92905.
    204. Vassilieva EV, Antonkine ML, Zybailov BL, Yang F, Jakobs CU, Golbeck JH, Bryant DA. Electron transfer may occur in the chlorosome envelope: the CsmI and CsmJ proteins of chlorosomes are 2Fe-2S ferredoxins. Biochemistry. 2001 Jan 16; 40(2):464-73. PMID: 11148041.
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    205. Bhaya D, Bianco NR, Bryant D, Grossman A. Type IV pilus biogenesis and motility in the cyanobacterium Synechocystis sp. PCC6803. Mol Microbiol. 2000 Aug; 37(4):941-51. PMID: 10972813.
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    206. Antonkine ML, Bentrop D, Bertini I, Luchinat C, Shen G, Bryant DA, Stehlik D, Golbeck JH. Paramagnetic 1H NMR spectroscopy of the reduced, unbound photosystem I subunit PsaC: sequence-specific assignment of contact-shifted resonances and identification of mixed- and equal-valence Fe-Fe pairs in [4Fe-4S] centers FA- and FB-. J Biol Inorg Chem. 2000 Jun; 5(3):381-92. PMID: 10907749.
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    207. Johnson TW, Shen G, Zybailov B, Kolling D, Reategui R, Beauparlant S, Vassiliev IR, Bryant DA, Jones AD, Golbeck JH, Chitnis PR. Recruitment of a foreign quinone into the A(1) site of photosystem I. I. Genetic and physiological characterization of phylloquinone biosynthetic pathway mutants in Synechocystis sp. pcc 6803. J Biol Chem. 2000 Mar 24; 275(12):8523-30. PMID: 10722690.
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    208. Sakamoto T, Inoue-Sakamoto K, Bryant DA. A novel nitrate/nitrite permease in the marine Cyanobacterium synechococcus sp. strain PCC 7002. J Bacteriol. 1999 Dec; 181(23):7363-72. PMID: 10572142; PMCID: PMC103701.
    209. Mayer KL, Shen G, Bryant DA, Lecomte JT, Falzone CJ. The solution structure of photosystem I accessory protein E from the cyanobacterium Nostoc sp. strain PCC 8009. Biochemistry. 1999 Oct 12; 38(41):13736-46. PMID: 10521281.
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    210. Sakamoto T, Bryant DA. Nitrate transport and not photoinhibition limits growth of the freshwater Cyanobacterium synechococcus species PCC 6301 at low temperature. Plant Physiol. 1999 Feb; 119(2):785-94. PMID: 9952475; PMCID: PMC32156.
    211. Zhao J, Li R, Bryant DA. Measurement of photosystem I activity with photoreduction of recombinant flavodoxin. Anal Biochem. 1998 Nov 15; 264(2):263-70. PMID: 9866692.
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    212. Gruber TM, Bryant DA. Characterization of the group 1 and group 2 sigma factors of the green sulfur bacterium Chlorobium tepidum and the green non-sulfur bacterium Chloroflexus aurantiacus. Arch Microbiol. 1998 Oct; 170(4):285-96. PMID: 9732443.
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    213. Chung S, Shen G, Ormerod J, Bryant DA. Insertional inactivation studies of the csmA and csmC genes of the green sulfur bacterium Chlorobium vibrioforme 8327: the chlorosome protein CsmA is required for viability but CsmC is dispensable. FEMS Microbiol Lett. 1998 Jul 15; 164(2):353-61. PMID: 9682485.
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    214. Xia Z, Broadhurst RW, Laue ED, Bryant DA, Golbeck JH, Bendall DS. Structure and properties in solution of PsaD, an extrinsic polypeptide of photosystem I. Eur J Biochem. 1998 Jul 01; 255(1):309-16. PMID: 9692933.
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    215. Sakamoto T, Delgaizo VB, Bryant DA. Growth on urea can trigger death and peroxidation of the cyanobacterium Synechococcus sp. strain PCC 7002. Appl Environ Microbiol. 1998 Jul; 64(7):2361-6. PMID: 9647800; PMCID: PMC106396.
    216. Gruber TM, Eisen JA, Gish K, Bryant DA. The phylogenetic relationships of Chlorobium tepidum and Chloroflexus aurantiacus based upon their RecA sequences. FEMS Microbiol Lett. 1998 May 01; 162(1):53-60. PMID: 9595663; PMCID: PMC3182672.
    217. Gruber TM, Bryant DA. Characterization of the alternative sigma-factors SigD and SigE in Synechococcus sp. strain PCC 7002. SigE is implicated in transcription of post-exponential-phase-specific genes. Arch Microbiol. 1998 Mar; 169(3):211-9. PMID: 9477255.
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    218. Sakamoto T, Shen G, Higashi S, Murata N, Bryant DA. Alteration of low-temperature susceptibility of the cyanobacterium Synechococcus sp. PCC 7002 by genetic manipulation of membrane lipid unsaturation. Arch Microbiol. 1998 Jan; 169(1):20-8. PMID: 9396831.
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    219. Sakamoto T, Bryant DA. Growth at low temperature causes nitrogen limitation in the cyanobacterium Synechococcus sp. PCC 7002. Arch Microbiol. 1998 Jan; 169(1):10-9. PMID: 9396830.
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    220. Caslake LF, Gruber TM, Bryant DA. Expression of two alternative sigma factors of Synechococcus sp. strain PCC 7002 is modulated by carbon and nitrogen stress. Microbiology. 1997 Dec; 143 ( Pt 12):3807-18. PMID: 9421905.
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    221. Sakamoto T, Higashi S, Wada H, Murata N, Bryant DA. Low-temperature-induced desaturation of fatty acids and expression of desaturase genes in the cyanobacterium Synechococcus sp. PCC 7002. FEMS Microbiol Lett. 1997 Jul 15; 152(2):313-20. PMID: 9231425.
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    222. Gruber TM, Bryant DA. Molecular systematic studies of eubacteria, using sigma70-type sigma factors of group 1 and group 2. J Bacteriol. 1997 Mar; 179(5):1734-47. PMID: 9045836; PMCID: PMC178889.
    223. Sakamoto T, Bryant DA. Temperature-regulated mRNA accumulation and stabilization for fatty acid desaturase genes in the cyanobacterium Synechococcus sp. strain PCC 7002. Mol Microbiol. 1997 Mar; 23(6):1281-92. PMID: 9106218.
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    224. Jung YS, Vassiliev IR, Qiao F, Yang F, Bryant DA, Golbeck JH. Modified ligands to FA and FB in photosystem I. Proposed chemical rescue of a [4Fe-4S] cluster with an external thiolate in alanine, glycine, and serine mutants of PsaC. J Biol Chem. 1996 Dec 06; 271(49):31135-44. PMID: 8940111.
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    225. Chung S, Bryant DA. Characterization of csmB genes, encoding a 7.5-kDa protein of the chlorosome envelope, from the green sulfur bacteria Chlorobium vibrioforme 8327D and Chlorobium tepidum. Arch Microbiol. 1996 Oct; 166(4):234-44. PMID: 8824146.
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    226. Chung S, Bryant DA. Characterization of the csmD and csmE genes from Chlorobium tepidum. The CsmA, CsmC, CsmD, and CsmE proteins are components of the chlorosome envelope. Photosynth Res. 1996 Oct; 50(1):41-59. PMID: 24271821.
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    227. Schluchter WM, Shen G, Zhao J, Bryant DA. Characterization of psaI and psaL mutants of Synechococcus sp. strain PCC 7002: a new model for state transitions in cyanobacteria. Photochem Photobiol. 1996 Jul; 64(1):53-66. PMID: 8787020.
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    228. Caslake LF, Bryant DA. The sigA gene encoding the major sigma factor of RNA polymerase from the marine cyanobacterium Synechococcus sp. strain PCC 7002: cloning and characterization. Microbiology. 1996 Feb; 142 ( Pt 2):347-57. PMID: 8932708.
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    229. Mühlenhoff U, Kruip J, Bryant DA, Rögner M, Sétif P, Boekema E. Characterization of a redox-active cross-linked complex between cyanobacterial photosystem I and its physiological acceptor flavodoxin. EMBO J. 1996 Feb 01; 15(3):488-97. PMID: 8599932; PMCID: PMC449967.
    230. Mühlenhoff U, Zhao J, Bryant DA. Interaction between photosystem I and flavodoxin from the cyanobacterium Synechococcus sp. PCC 7002 as revealed by chemical cross-linking. Eur J Biochem. 1996 Jan 15; 235(1-2):324-31. PMID: 8631349.
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    231. Mehari T, Qiao F, Scott MP, Nellis DF, Zhao J, Bryant DA, Golbeck JH. Modified ligands to FA and FB in photosystem I. I. Structural constraints for the formation of iron-sulfur clusters in free and rebound PsaC. J Biol Chem. 1995 Nov 24; 270(47):28108-17. PMID: 7499299.
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    232. Yu L, Vassiliev IR, Jung YS, Bryant DA, Golbeck JH. Modified ligands to FA and FB in photosystem I. II. Characterization of a mixed ligand [4Fe-4S] cluster in the C51D mutant of PsaC upon rebinding to P700-Fx cores. J Biol Chem. 1995 Nov 24; 270(47):28118-25. PMID: 7499300.
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    233. Shevelev EL, Bryant DA, Löffelhardt W, Bohnert HJ. Ribonuclease-P RNA gene of the plastid chromosome from Cyanophora paradoxa. DNA Res. 1995 Oct 31; 2(5):231-4. PMID: 8770566.
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    234. Yu L, Bryant DA, Golbeck JH. Evidence for a mixed-ligand [4Fe-4S] cluster in the C14D mutant of PsaC. Altered reduction potentials and EPR spectral properties of the FA and FB clusters on rebinding to the P700-FX core. Biochemistry. 1995 Jun 20; 34(24):7861-8. PMID: 7794897.
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    235. Shen G, Bryant DA. Characterization of a Synechococcus sp. strain PCC 7002 mutant lacking Photosystem I. Protein assembly and energy distribution in the absence of the Photosystem I reaction center core complex. Photosynth Res. 1995 May; 44(1-2):41-53. PMID: 24307024.
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    236. Gindt YM, Zhou J, Bryant DA, Sauer K. Spectroscopic studies of phycobilisome subcore preparations lacking key core chromophores: assignment of excited state energies to the Lcm, beta 18 and alpha AP-B chromophores. Biochim Biophys Acta. 1994 Jul 29; 1186(3):153-62. PMID: 8043589.
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    237. Bryant DA. Gene nomenclature recommendations for green photosynthetic bacteria and heliobacteria. Photosynth Res. 1994 Jul; 41(1):27-8. PMID: 24310010.
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    238. Chung S, Frank G, Zuber H, Bryant DA. Genes encoding two chlorosome components from the green sulfur bacteriaChlorobium vibrioforme strain 8327D andChlorobium tepidum. Photosynth Res. 1994 Jul; 41(1):261-75. PMID: 24310033.
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    239. Falzone CJ, Kao YH, Zhao J, Bryant DA, Lecomte JT. Three-dimensional solution structure of PsaE from the cyanobacterium Synechococcus sp. strain PCC 7002, a photosystem I protein that shows structural homology with SH3 domains. Biochemistry. 1994 May 24; 33(20):6052-62. PMID: 8193119.
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    240. Falzone CJ, Kao YH, Zhao J, MacLaughlin KL, Bryant DA, Lecomte JT. 1H and 15N NMR assignments of PsaE, a photosystem I subunit from the cyanobacterium Synechococcus sp. strain PCC 7002. Biochemistry. 1994 May 24; 33(20):6043-51. PMID: 8193118.
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    241. Yu L, Zhao J, Muhlenhoff U, Bryant DA, Golbeck JH. PsaE Is Required for in Vivo Cyclic Electron Flow around Photosystem I in the Cyanobacterium Synechococcus sp. PCC 7002. Plant Physiol. 1993 Sep; 103(1):171-180. PMID: 12231924.
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    242. Yu L, Zhao J, Lu W, Bryant DA, Golbeck JH. Characterization of the [3Fe-4S] and [4Fe-4S] clusters in unbound PsaC mutants C14D and C51D. Midpoint potentials of the single [4Fe-4S] clusters are identical to FA and FB in bound PsaC of photosystem I. Biochemistry. 1993 Aug 17; 32(32):8251-8. PMID: 8394132.
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    243. Zhao J, Snyder WB, Mühlenhoff U, Rhiel E, Warren PV, Golbeck JH, Bryant DA. Cloning and characterization of the psaE gene of the cyanobacterium Synechococcus sp. PCC 7002: characterization of a psaE mutant and overproduction of the protein in Escherichia coli. Mol Microbiol. 1993 Jul; 9(1):183-94. PMID: 8412664.
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    244. Schluchter WM, Zhao J, Bryant DA. Isolation and characterization of the ndhF gene of Synechococcus sp. strain PCC 7002 and initial characterization of an interposon mutant. J Bacteriol. 1993 Jun; 175(11):3343-52. PMID: 8501038; PMCID: PMC204731.
    245. Dubbs JM, Bryant DA. Organization and transcription of the genes encoding two differentially expressed phycocyanins in the cyanobacterium Pseudanabaena sp. PCC 7409. Photosynth Res. 1993 Jun; 36(3):169-83. PMID: 24318921.
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    246. Rhiel E, Bryant DA. Nucleotide sequence of the psaE gene of cyanobacterium Synechococcus sp. PCC 6301. Plant Physiol. 1993 Feb; 101(2):701-2. PMID: 8278517; PMCID: PMC160626.
    247. Swanson RV, Zhou J, Leary JA, Williams T, de Lorimier R, Bryant DA, Glazer AN. Characterization of phycocyanin produced by cpcE and cpcF mutants and identification of an intergenic suppressor of the defect in bilin attachment. J Biol Chem. 1992 Aug 15; 267(23):16146-54. PMID: 1644802.
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    248. Zhou J, Gasparich GE, Stirewalt VL, de Lorimier R, Bryant DA. The cpcE and cpcF genes of Synechococcus sp. PCC 7002. Construction and phenotypic characterization of interposon mutants. J Biol Chem. 1992 Aug 15; 267(23):16138-45. PMID: 1644801.
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    249. Gindt YM, Zhou J, Bryant DA, Sauer K. Core mutations of Synechococcus sp. PCC 7002 phycobilisomes: a spectroscopic study. J Photochem Photobiol B. 1992 Aug 14; 15(1-2):75-89. PMID: 1460543.
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    250. Fairchild CD, Zhao J, Zhou J, Colson SE, Bryant DA, Glazer AN. Phycocyanin alpha-subunit phycocyanobilin lyase. Proc Natl Acad Sci U S A. 1992 Aug 01; 89(15):7017-21. PMID: 1495995; PMCID: PMC49636.
    251. Zhao J, Li N, Warren PV, Golbeck JH, Bryant DA. Site-directed conversion of a cysteine to aspartate leads to the assembly of a [3Fe-4S] cluster in PsaC of photosystem I. The photoreduction of FA is independent of FB. Biochemistry. 1992 Jun 09; 31(22):5093-9. PMID: 1318744.
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    252. Bryant DA. Puzzles of chloroplast ancestry. Curr Biol. 1992 May; 2(5):240-2. PMID: 15335958.
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    253. Glauser M, Bryant DA, Frank G, Wehrli E, Rusconi SS, Sidler W, Zuber H. Phycobilisome structure in the cyanobacteria Mastigocladus laminosus and Anabaena sp. PCC 7120. Eur J Biochem. 1992 May 01; 205(3):907-15. PMID: 1577008.
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    254. Glauser M, Stirewalt VL, Bryant DA, Sidler W, Zuber H. Structure of the genes encoding the rod-core linker polypeptides of Mastigocladus laminosus phycobilisomes and functional aspects of the phycobiliprotein/linker-polypeptide interactions. Eur J Biochem. 1992 May 01; 205(3):927-37. PMID: 1577010.
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    255. Schluchter WM, Bryant DA. Molecular characterization of ferredoxin-NADP+ oxidoreductase in cyanobacteria: cloning and sequence of the petH gene of Synechococcus sp. PCC 7002 and studies on the gene product. Biochemistry. 1992 Mar 31; 31(12):3092-102. PMID: 1554697.
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    256. Rhiel E, Stirewalt VL, Gasparich GE, Bryant DA. The psaC genes of Synechococcus sp. PCC7002 and Cyanophora paradoxa: cloning and sequence analysis. Gene. 1992 Mar 01; 112(1):123-8. PMID: 1551590.
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    257. Glauser M, Sidler WA, Graham KW, Bryant DA, Frank G, Wehrli E, Zuber H. Three C-phycoerythrin-associated linker polypeptides in the phycobilisome of green-light-grown Calothrix sp. PCC 7601 (cyanobacteria). FEBS Lett. 1992 Feb 03; 297(1-2):19-23. PMID: 1551428.
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    258. Lockhart PJ, Howe CJ, Bryant DA, Beanland TJ, Larkum AW. Substitutional bias confounds inference of cyanelle origins from sequence data. J Mol Evol. 1992 Feb; 34(2):153-62. PMID: 1556750.
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    259. Dubbs JM, Bryant DA. Molecular cloning and transcriptional analysis of the cpeBA operon of the cyanobacterium Pseudanabaena species PCC7409. Mol Microbiol. 1991 Dec; 5(12):3073-85. PMID: 1809846.
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    260. Bryant DA, Stirewalt VL, Glauser M, Frank G, Sidler W, Zuber H. A small multigene family encodes the rod-core linker polypeptides of Anabaena sp. PCC7120 phycobilisomes. Gene. 1991 Oct 30; 107(1):91-9. PMID: 1743523.
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    261. Li N, Warren PV, Golbeck JH, Frank G, Zuber H, Bryant DA. Polypeptide composition of the Photosystem I complex and the Photosystem I core protein from Synechococcus sp. PCC 6301. Biochim Biophys Acta. 1991 Aug 23; 1059(2):215-25. PMID: 1653017.
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    262. Li N, Zhao JD, Warren PV, Warden JT, Bryant DA, Golbeck JH. PsaD is required for the stable binding of PsaC to the photosystem I core protein of Synechococcus sp. PCC 6301. Biochemistry. 1991 Aug 06; 30(31):7863-72. PMID: 1651109.
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    263. Bryant DA, Schluchter WM, Stirewalt VL. Ferredoxin and ribosomal protein S10 are encoded on the cyanelle genome of Cyanophora paradoxa. Gene. 1991 Feb 15; 98(2):169-75. PMID: 1901820.
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    264. Zhao JD, Warren PV, Li N, Bryant DA, Golbeck JH. Reconstitution of electron transport in photosystem I with PsaC and PsaD proteins expressed in Escherichia coli. FEBS Lett. 1990 Dec 10; 276(1-2):175-80. PMID: 2125006.
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    265. de Lorimier R, Bryant DA, Stevens SE. Genetic analysis of a 9 kDa phycocyanin-associated linker polypeptide. Biochim Biophys Acta. 1990 Aug 09; 1019(1):29-41. PMID: 2118804.
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    266. Gingrich JC, Gasparich GE, Sauer K, Bryant DA. Nucleotide sequence and expression of the two genes encoding D2 protein and the single gene encoding the CP43 protein of Photosystem II in the cyanobacterium synechococcus sp. PCC 7002. Photosynth Res. 1990 May; 24(2):137-50. PMID: 24419907.
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    267. Murphy RC, Gasparich GE, Bryant DA, Porter RD. Nucleotide sequence and further characterization of the Synechococcus sp. strain PCC 7002 recA gene: complementation of a cyanobacterial recA mutation by the Escherichia coli recA gene. J Bacteriol. 1990 Feb; 172(2):967-76. PMID: 2105307; PMCID: PMC208525.
    268. Bryant DA, de Lorimier R, Guglielmi G, Stevens SE. Structural and compositional analyses of the phycobilisomes of Synechococcus sp. PCC 7002. Analyses of the wild-type strain and a phycocyanin-less mutant constructed by interposon mutagenesis. Arch Microbiol. 1990; 153(6):550-60. PMID: 2164365.
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    269. de Lorimier R, Guglielmi G, Bryant DA, Stevens SE. Structure and mutation of a gene encoding a Mr 33,000 phycocyanin-associated linker polypeptide. Arch Microbiol. 1990; 153(6):541-9. PMID: 2114862.
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    270. Bryant DA, Stirewalt VL. The cyanelle genome of Cyanophora paradoxa encodes ribosomal proteins not encoded by the chloroplasts genomes of higher plants. FEBS Lett. 1990 Jan 01; 259(2):273-80. PMID: 2403527.
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    271. Stirewalt VL, Bryant DA. Molecular cloning and nucleotide sequence of the petG gene of the cyanelle genome of Cyanophora paradoxa. Nucleic Acids Res. 1989 Dec 11; 17(23):10095. PMID: 2513551; PMCID: PMC335233.
    272. Stirewalt VL, Bryant DA. Nucleotide sequence of the psbK gene of the cyanelle genome of Cyanophora paradoxa. Nucleic Acids Res. 1989 Dec 11; 17(23):10096. PMID: 2513552; PMCID: PMC335234.
    273. Maxson P, Sauer K, Zhou JH, Bryant DA, Glazer AN. Spectroscopic studies of cyanobacterial phycobilisomes lacking core polypeptides. Biochim Biophys Acta. 1989 Oct 26; 977(1):40-51. PMID: 2508754.
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    274. Bruce D, Brimble S, Bryant DA. State transitions in a phycobilisome-less mutant of the cyanobacterium Synechococcus sp. PCC 7002. Biochim Biophys Acta. 1989 Apr 17; 974(1):66-73. PMID: 2493811.
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    275. Arciero DM, Bryant DA, Glazer AN. In vitro attachment of bilins to apophycocyanin. I. Specific covalent adduct formation at cysteinyl residues involved in phycocyanobilin binding in C-phycocyanin. J Biol Chem. 1988 Dec 05; 263(34):18343-9. PMID: 3142876.
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    276. Cantrell A, Bryant DA. Nucleotide sequence of the genes encoding cytochrome b-559 from the cyanelle genome of Cyanophora paradoxa. Photosynth Res. 1988 Apr; 16(1-2):65-81. PMID: 24430992.
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    277. Gingrich JC, Buzby JS, Stirewalt VL, Bryant DA. Genetic analysis of two new mutations resulting in herbicide resistance in the cyanobacterium Synechcoccus sp. PCC 7002. Photosynth Res. 1988 Apr; 16(1-2):83-99. PMID: 24430993.
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    278. Shively JM, Bryant DA, Fuller RC, Konopka AE, Stevens SE, Strohl WR. Functional inclusions in prokaryotic cells. Int Rev Cytol. 1988; 113:35-100. PMID: 3068183.
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    279. Cantrell A, Bryant DA. Molecular cloning and nucleotide sequence of the psaA and psaB genes of the cyanobacterium Synechococcus sp. PCC 7002. Plant Mol Biol. 1987 Sep; 9(5):453-68. PMID: 24277132.
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    280. Murphy RC, Bryant DA, Porter RD, de Marsac NT. Molecular cloning and characterization of the recA gene from the cyanobacterium Synechococcus sp. strain PCC 7002. J Bacteriol. 1987 Jun; 169(6):2739-47. PMID: 3108239; PMCID: PMC212179.
    281. de Lorimier R, Guglielmi G, Bryant DA, Stevens SE. Functional expression of plastid allophycocyanin genes in a cyanobacterium. J Bacteriol. 1987 May; 169(5):1830-5. PMID: 3106320; PMCID: PMC212032.
    282. Houmard J, Mazel D, Moguet C, Bryant DA, Tandeau de Marsac N. Organization and nucleotide sequence of genes encoding core components of the phycobilisomes from Synechococcus 6301. Mol Gen Genet. 1986 Dec; 205(3):404-10. PMID: 3031427.
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    283. Mazel D, Guglielmi G, Houmard J, Sidler W, Bryant DA, Tandeau de Marsac N. Green light induces transcription of the phycoerythrin operon in the cyanobacterium Calothrix 7601. Nucleic Acids Res. 1986 Nov 11; 14(21):8279-90. PMID: 2431391; PMCID: PMC311859.
    284. Lambert DH, Bryant DA, Stirewalt VL, Dubbs JM, Stevens SE, Porter RD. Gene map for the Cyanophora paradoxa cyanelle genome. J Bacteriol. 1985 Nov; 164(2):659-64. PMID: 3932327; PMCID: PMC214303.
    285. Tandeau de Marsac N, Mazel D, Bryant DA, Houmard J. Molecular cloning and nucleotide sequence of a developmentally regulated gene from the cyanobacterium Calothrix PCC 7601: a gas vesicle protein gene. Nucleic Acids Res. 1985 Oct 25; 13(20):7223-36. PMID: 2997744; PMCID: PMC322040.
    286. Bryant DA, de Lorimier R, Lambert DH, Dubbs JM, Stirewalt VL, Stevens SE, Porter RD, Tam J, Jay E. Molecular cloning and nucleotide sequence of the alpha and beta subunits of allophycocyanin from the cyanelle genome of Cyanophora paradoxa. Proc Natl Acad Sci U S A. 1985 May; 82(10):3242-6. PMID: 2987916; PMCID: PMC397751.
    287. de Lorimier R, Bryant DA, Porter RD, Liu WY, Jay E, Stevens SE. Genes for the alpha and beta subunits of phycocyanin. Proc Natl Acad Sci U S A. 1984 Dec; 81(24):7946-50. PMID: 6096868; PMCID: PMC392270.
    288. Kipe-Nolt JA, Stevens SE, Bryant DA. Growth and Chromatic Adaptation of Nostoc sp. Strain MAC and the Pigment Mutant R-MAC. Plant Physiol. 1982 Nov; 70(5):1549-53. PMID: 16662715.
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    289. Bryant D, Parsons JT. Site-directed mutagenesis of the src gene of Rous sarcoma virus: construction and characterization of a deletion mutant temperature sensitive for transformation. J Virol. 1982 Nov; 44(2):683-91. PMID: 6292526; PMCID: PMC256312.
    290. Bryant DA. The photoregulated expression of multiple phycocyanin species. A general mechanism for the control of phycocyanin synthesis in chromatically adapting cyanobacteria. Eur J Biochem. 1981 Oct; 119(2):425-9. PMID: 6796414.
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    291. Bryant DA, Cohen-Bazire G. Effects of chromatic illumination on cyanobacterial phycobilisomes. Evidence for the specific induction of a second pair of phycocyanin subunits in Pseudanabaena 7409 grown in red light. Eur J Biochem. 1981 Oct; 119(2):415-24. PMID: 6796413.
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    292. Bryant DA, Hixson CS, Glazer AN. Structural studies on phycobiliproteins III. Comparison of bilin-containing peptides from the beta subunits of C-phycocyanin, R-phycocyanin, and phycoerythrocyanin. J Biol Chem. 1978 Jan 10; 253(1):220-5. PMID: 412849.
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    293. Bryant DA, Glazer AN, Eiserling FA. Characterization and structural properties of the major biliproteins of Anabaena sp. Arch Microbiol. 1976 Oct 11; 110(1):61-75. PMID: 828020.
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    294. Glazer AN, Apell GS, Hixson CS, Bryant DA, Rimon S, Brown DM. Biliproteins of cyanobacteria and Rhodophyta: Homologous family of photosynthetic accessory pigments. Proc Natl Acad Sci U S A. 1976 Feb; 73(2):428-31. PMID: 16578740.
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    295. Glazer AN, Bryant DA. Allophycocyanin B (lambdamax 671, 618 nm): a new cyanobacterial phycobiliprotein. Arch Microbiol. 1975 Jun 20; 104(1):15-22. PMID: 808186.
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